Document Type
Article
Publication Date
2023
Publication Title
Bioinformatics
First Page
btac762
DOI
https://doi.org/10.1093/bioinformatics/btac762
Additional Publication URL
https://academic.oup.com/bioinformatics/article/39/1/btac762/6849516
Abstract
Summary: The NanoTube is an open-source pipeline that simplifies the processing, quality control, normalization and analysis of NanoString nCounter gene expression data. It is implemented in an extensible R library, which performs a variety of gene expression analysis techniques and contains additional functions for integration with other R libraries performing advanced NanoString analysis techniques. Additionally, the NanoTube web application is available as a simple tool for researchers without programming expertise.
Availability and implementation: The NanoTube R package is available on Bioconductor under the GPL-3 license (https://www.bioconductor.org/packages/NanoTube/). The R-Shiny application can be downloaded at https://github.com/calebclass/Shiny-NanoTube, or a simplified version of this application can be run on all major browsers, at https://research.butler.edu/nanotube/.
Contact: cclass@butler.edu
Supplementary information: Supplementary data are available at Bioinformatics online.
Rights
Originally published by Oxford Academic under a Creative Commons 4.0 in Bioinformatics, 2023, Volume 39, Issue 1. DOI: 10.1093/bioinformatics/btac762.
Recommended Citation
Class, Caleb; Lukan, Caiden J.; Bristow, Christopher A.; and Do, Kim-Anh, "Easy NanoString nCounter data analysis with the NanoTube" (2023). Scholarship and Professional Work – COPHS. 303.
https://digitalcommons.butler.edu/cophs_papers/303